Just my 2 cents:
I think Gainesville might be misinterpreting the rules regarding the first two rounds.
I think as long as your time is up you can be skipped. Missing a pick means being skipped and not showing up for the pick therefore, so as not to penalize the franchise, the commish, when he feels like he has given you enough time to show and pick, will then pick BPA for you and the proper warnings regarding being replaced go into effect.
In the 3rd through 13th rounds you get skipped without getting BPA assigned and then the commish can do his possibly replacing you thing.
Anyone can pick so long as another person's time is up. Its just in the first two rounds, the commish will assign a BPA.
That's my interpretation. If its wrong, perhaps the commish can clarify. So in my interpretation Evantime and the CrotorNats were fine doing what they did.