I would...though it's a big risk.
I look at Embiid as an extremely high risk prospect, and not only because of his injury history. He's a guy who has all the physical gifts to be an elite big, but from what I've seen his basketball IQ is...lets be polite and say 'unspectacular'.
I could see Embiid becoming an elite center in a few years, but I could also see him following the fate of Andrew Bynum - a guy who (injuries aside) followed every mind-blowing good play with an equivalently head-scratching bonehead play. Low BBIQ, questionable personality, very raw...
Then you throw the injury history in there ON TOP of all that and you're and things look pretty bad.
Honestly, between his heatlh concerns and his BBIQ issues I feel like there is about a 60%-65% chance that Embiid becomes a bust and the next big draft disappointment (following in the shows of Darko and / or Oden). That leaves me with about 35% confidence that he will become a very good (all-star or near all-star) starter.
Thing is, his upside is so high that if he DOES pan out positively, he could become absolutely dominant - I'm talking Demarcus Cousins / Anthony Davis good. Even though I feel the chance of that is pretty slim, big men of that calibre are so dominant that I think I'd take the gamble.
But this is assuming our own pick is outside of the top 5, because if we got a top 5 pick I'd probably say no.