It's a shame. They have some flaws. But for all of it, had they been healthy all year, they'd probably be at least in the Wild Card lead and quite possibly have the best team in baseball.
Still 45 games left. Pedroia is back in a couple of days and Tek isn't too far off either. With Lowell and Sach around, they may be able to replicate some of Youk's offense.
Now if Beckett can start pitching like he can, the pen wouldn't be nearly as big of a concern.